DNA Binding Motif

Accessions: MA1449.1 (JASPAR 2024)
Names: hlh-30
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 12
Consensus: wrTCACGTGAyw
Weblogo:
PSSM: P0 A C G T
01 513 371 404 474 w
02 695 158 664 245 r
03 125 181 104 1352 T
04 6 1739 11 6 C
05 1667 16 12 67 A
06 14 1562 31 155 C
07 155 31 1562 14 G
08 67 12 16 1667 T
09 6 11 1739 6 G
10 1352 104 181 125 A
11 245 664 158 695 y
12 474 404 371 513 w
Type: Heterodimer
Binding TFs: H2KZZ2 (Helix-loop-helix DNA-binding domain)
H2KZZ2
Binding Sites: MA1449.1.1
MA1449.1.10
MA1449.1.11
MA1449.1.12
MA1449.1.13
MA1449.1.14
MA1449.1.15
MA1449.1.16
MA1449.1.17
MA1449.1.18
MA1449.1.19
MA1449.1.2
MA1449.1.20
MA1449.1.3
MA1449.1.4
MA1449.1.5
MA1449.1.6
MA1449.1.7 / MA1449.1.8
MA1449.1.9
Publications: Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.