DNA Binding Motif

						

			
Accessions: UN0358.1 (JASPAR 2024), MA2041.1 (JASPAR 2024)

			
Names: ATMYB13, MYB13
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 16
Consensus: hwhyyCACCAACCahh
Weblogo: 
PSSM: P0      A      C      G      T
01    348    300    168    332      h
02    324    265    214    345      w
03    349    320    157    322      h
04    215    472    147    314      y
05    140    581     70    357      y
06     60    914     36    138      C
07   1107      5     11     25      A
08    107   1022      8     11      C
09     10   1117      6     15      C
10    905     46     17    180      A
11   1106     11     22      9      A
12     90   1034      5     19      C
13     35   1016     16     81      C
14    728    191     95    134      a
15    390    360    106    292      h
16    375    313    153    307      h
Type: Heterodimer
Binding TFs: Q9LNC9 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9LNC9
Binding Sites: UN0358.1.1
UN0358.1.10
MA2041.1.8 / UN0358.1.11
UN0358.1.12
MA2041.1.9 / UN0358.1.13
MA2041.1.10 / UN0358.1.14
MA2041.1.11 / UN0358.1.15
UN0358.1.16
MA2041.1.12 / UN0358.1.17
MA2041.1.13 / UN0358.1.18
UN0358.1.19
MA2041.1.1 / UN0358.1.2
MA2041.1.14 / UN0358.1.20
UN0358.1.3
MA2041.1.2 / UN0358.1.4
MA2041.1.3 / UN0358.1.5
MA2041.1.4 / UN0358.1.6
UN0358.1.7
MA2041.1.6 / UN0358.1.8
MA2041.1.7 / UN0358.1.9
MA2041.1.15
MA2041.1.16
MA2041.1.17
MA2041.1.18
MA2041.1.19
MA2041.1.20
MA2041.1.5
			
Publications: Zhou J, Lee C, Zhong R, Ye ZH. MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell 21:248-66 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.