DNA Binding Motif

						

			
Accessions: MA0508.1 (JASPAR 2024)

			
Names: PRDM1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: wrAAAGtGAAAGTga
Weblogo: 
PSSM: P0      A      C      G      T
01   1779    471   1037   1316      w
02   1649    298   2331    325      r
03   3148    345    688    422      A
04   3486    439    442    236      A
05   4173      0    430      0      A
06    422      0   4038    143      G
07    728    110    930   2835      t
08    211      0   4392      0      G
09   4603      0      0      0      A
10   4161      0    430     12      A
11   4497      0     39     67      A
12    159    142   4186    116      G
13    117    458    520   3508      T
14   1057    498   2239    809      g
15   2042    778    973    810      a
Type: Heterodimer
Binding TFs: O75626 (Zinc finger, C2H2 type, SET domain, Zinc-finger double domain, C2H2-type zinc finger)
O75626
Binding Sites: MA0508.1.1
MA0508.1.10
MA0508.1.11
MA0508.1.12
MA0508.1.13
MA0508.1.14
MA0508.1.15
MA0508.1.16
MA0508.1.17
MA0508.1.18
MA0508.1.19
MA0508.1.2
MA0508.1.20
MA0508.1.3
MA0508.1.4
MA0508.1.5
MA0508.1.6
MA0508.1.7
MA0508.1.8
MA0508.1.9
			
Publications: Doody G.M, Care M.A, Burgoyne N.J, Bradford J.R, Bota M, Bonifer C, Westhead D.R, Tooze R.M. An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression. Nucleic acids research 38:5336-50 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.