DNA Binding Motif
| Accessions: | UP00310A_1 (UniPROBE 20160601) |
| Names: | Not Available, Yrr1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | srhssrCGGAAATAAsssdsh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.21 0.34 0.30 0.14 s 02 0.33 0.15 0.37 0.15 r 03 0.33 0.27 0.14 0.27 h 04 0.21 0.28 0.29 0.22 s 05 0.21 0.37 0.27 0.15 s 06 0.34 0.05 0.60 0.01 r 07 0.01 0.97 0 0.02 C 08 0 0 0.99 0 G 09 0 0.02 0.97 0 G 10 0.93 0.01 0.05 0 A 11 0.73 0.03 0.12 0.12 A 12 0.89 0 0.01 0.10 A 13 0.01 0.01 0 0.98 T 14 0.84 0 0.01 0.15 A 15 0.87 0.06 0.05 0.02 A 16 0.19 0.35 0.32 0.14 s 17 0.23 0.29 0.30 0.18 s 18 0.15 0.31 0.33 0.22 s 19 0.28 0.16 0.27 0.30 d 20 0.10 0.37 0.30 0.22 s 21 0.27 0.32 0.16 0.25 h |
| Binding TFs: | UP00310A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AATATCCG AATCTCCG AATTTCCG ACGGAAAT ACGGAGAT ACGGATAT ATATCCGC ATCTCCGC ATGTCCGC ATTTCCGC ATTTCCGG CGGAAATA CGGAATTA CGGACATA CGGAGATA CGGATATA CGGATTTA CGGGAATA GGAAATAA GGATATAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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