DNA Binding Motif

Accessions: UP00310A_1 (UniPROBE 20160601)
Names: Not Available, Yrr1
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: srhssrCGGAAATAAsssdsh
Weblogo:
PSSM: P0 A C G T
01 0.21 0.34 0.30 0.14 s
02 0.33 0.15 0.37 0.15 r
03 0.33 0.27 0.14 0.27 h
04 0.21 0.28 0.29 0.22 s
05 0.21 0.37 0.27 0.15 s
06 0.34 0.05 0.60 0.01 r
07 0.01 0.97 0 0.02 C
08 0 0 0.99 0 G
09 0 0.02 0.97 0 G
10 0.93 0.01 0.05 0 A
11 0.73 0.03 0.12 0.12 A
12 0.89 0 0.01 0.10 A
13 0.01 0.01 0 0.98 T
14 0.84 0 0.01 0.15 A
15 0.87 0.06 0.05 0.02 A
16 0.19 0.35 0.32 0.14 s
17 0.23 0.29 0.30 0.18 s
18 0.15 0.31 0.33 0.22 s
19 0.28 0.16 0.27 0.30 d
20 0.10 0.37 0.30 0.22 s
21 0.27 0.32 0.16 0.25 h
Binding TFs: UP00310A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Sites: AATATCCG
AATCTCCG
AATTTCCG
ACGGAAAT
ACGGAGAT
ACGGATAT
ATATCCGC
ATCTCCGC
ATGTCCGC
ATTTCCGC
ATTTCCGG
CGGAAATA
CGGAATTA
CGGACATA
CGGAGATA
CGGATATA
CGGATTTA
CGGGAATA
GGAAATAA
GGATATAA
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

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