DNA Binding Motif

						

			
Accessions: UP00459A_1 (UniPROBE 20160601), UP00459A_2 (UniPROBE 20160601)

			
Names: Hidden Mat Left ALPHA, Hmlalpha2
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: grtrahswTTACAyRwtwtmsy
Weblogo: 
PSSM: P0      A      C      G      T
01   0.17   0.14   0.46   0.23      g
02   0.27   0.19   0.32   0.22      r
03   0.23   0.19   0.21   0.38      t
04   0.28   0.21   0.38   0.13      r
05   0.37   0.25   0.24   0.15      a
06   0.28   0.25   0.13   0.34      h
07   0.23   0.30   0.28   0.20      s
08   0.61   0.02      0   0.37      w
09   0.05   0.01      0   0.94      T
10   0.04      0      0   0.96      T
11   0.99      0   0.01      0      A
12   0.01   0.99      0      0      C
13   0.94      0   0.06      0      A
14   0.02   0.63      0   0.34      y
15   0.26      0   0.74      0      R
16   0.36   0.23   0.15   0.26      w
17   0.12   0.13   0.16   0.59      t
18   0.26   0.20   0.10   0.43      w
19   0.11   0.24   0.22   0.43      t
20   0.34   0.35   0.14   0.17      m
21   0.12   0.28   0.45   0.15      s
22   0.11   0.33   0.19   0.38      y
Binding TFs: UP00459A (Homeobox domain, Homeobox KN domain)
Binding Sites: AACATGTA
AATTACAT
ACATGTAA
ATTACATG
CATGTAAA
CATGTTAA
ATTACACA
ATTACACG
ATTACATA
CCATGTAA
CCGTGTAA
CGTGTAAA
CTATGTAA
CTTTACAC
GATTACAC
GCATGTAA
GCGTGTAA
TATGTAAA
TCGTGTAA
TGTGTAAA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.