DNA Binding Motif
| Accessions: | MA1869.1 (JASPAR 2024) |
| Names: | FoxK |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | SELEX |
| Length: | 20 |
| Consensus: | kkkkktkTGTTTaywtwtww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 240 167 276 317 k 02 234 162 264 340 k 03 218 163 283 335 k 04 204 155 274 367 k 05 204 159 291 346 k 06 223 138 228 411 t 07 211 113 272 405 k 08 19 17 18 945 T 09 94 9 868 30 G 10 17 17 16 949 T 11 68 12 86 834 T 12 18 14 54 915 T 13 659 23 187 130 a 14 97 254 166 482 y 15 301 124 225 351 w 16 240 142 220 398 t 17 286 136 216 362 w 18 217 211 226 346 t 19 293 155 248 304 w 20 260 170 245 326 w |
| Type: | Heterodimer |
| Binding TFs: | Q4H3I2 (Fork head domain, FHA domain) Q4H3I2 |
| Publications: | José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.