DNA Binding Motif

						

			
Accessions: 4omy_CD (3D-footprint 20231221)

			
Names: NolR
Organisms: Sinorhizobium fredii
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of SeMet NolR from Sinorhizobium fredii in complex with oligo AT DNA
Length: 18
Consensus: AannTCAGnnnnnnCTmA
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     57     19      9     11      a
03     24     24     24     24      n
04     24     24     24     24      n
05      0      0      0     96      T
06      1     76      0     19      C
07     96      0      0      0      A
08      0      0     96      0      G
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15      0     96      0      0      C
16      0      0      0     96      T
17     48     28      9     11      m
18     96      0      0      0      A
Binding TFs: 4omy_C / 4omy_D (Bacterial regulatory protein, arsR family, MarR family, Helix-turn-helix domain, Winged helix-turn-helix DNA-binding)
Binding Sites: 4omy_G
4omy_H
			
Publications: Lee S.G, Krishnan H.B, Jez J.M. Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory protein NolR. Proceedings of the National Academy of Sciences of the United States of America 111:6509-14 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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