DNA Binding Motif
| Accessions: | UP00059A_1 (UniPROBE 20160601) |
| Names: | Arid5a, AT rich interactive domain 5A (Mrf1 like), D430024K22Rik, MGC36895 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | cyAATATTgmdadw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.18 0.43 0.23 0.17 c 02 0.16 0.32 0.03 0.48 y 03 0.85 0.03 0.07 0.05 A 04 0.96 0 0.01 0.02 A 05 0.06 0 0.01 0.93 T 06 0.93 0.01 0.01 0.06 A 07 0.02 0.01 0.01 0.96 T 08 0.04 0.09 0.04 0.83 T 09 0.23 0.03 0.52 0.22 g 10 0.34 0.35 0.18 0.12 m 11 0.29 0.13 0.27 0.31 d 12 0.57 0.08 0.19 0.16 a 13 0.29 0.18 0.26 0.27 d 14 0.34 0.23 0.15 0.27 w |
| Binding TFs: | UP00059A (ARID/BRIGHT DNA binding domain) |
| Binding Sites: | AAATATTA AAATATTG AATATCGT AATATTAA AATATTAG AATATTAT AATATTGA AATATTGC AATATTGG AATATTTC ATATTAAG ATATTATA ATATTATG CAATATCA CAATATTA CAATATTG CGATATTA GATATTAA TAATATCA AATATTGT |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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