DNA Binding Motif

						

			
Accessions: RARA_methyl_2 (HT-SELEX2 May2017)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 14
Consensus: rrGGtCrTGACCty
Weblogo: 
PSSM: P0      A      C      G      T
01    303    113    276    119      r
02    551    116    261     31      r
03     30     68    812    100      G
04     17     21    812    211      G
05    158     97    281    812      t
06      4    812     34     46      C
07    370      7    442      3      r
08     12    154      8    812      T
09     37      4    812      3      G
10    812    168     95     71      A
11    204    812     19      8      C
12     51    812     14     17      C
13     34    227    182    585      t
14    110    299    102    301      y
Binding TFs: RARA (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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