DNA Binding Motif

						

			
Accessions: SOX8_4 (HT-SELEX2 May2017)

			
Names: SOX8
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: ACAATrgvbcyATTGT
Weblogo: 
PSSM: P0      A      C      G      T
01   1557      0      0     42      A
02      0   1557     14     98      C
03   1557      0      0      1      A
04   1557     74     98      0      A
05    378     66    117   1557      T
06    448    155    843    112      r
07    353    370    701    132      g
08    395    415    449    298      v
09    292    451    413    401      b
10    138    713    363    344      c
11    115    845    154    443      y
12   1557    116     65    370      A
13      1    107     63   1557      T
14      1      0      0   1557      T
15     97     14   1557      0      G
16     39      1      0   1557      T
Binding TFs: SOX8 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.