DNA Binding Motif

						

			
Accessions: 6edt_F (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor SigA
Organisms: Mycobacterium tuberculosis, strain ATCC 25618 / H37Rv
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter
Length: 34
Consensus: GCCAGtCTAAnnnAnnnnnnnnnnnnnaGTCAAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0     96      0      0      C
03      0     96      0      0      C
04     96      0      0      0      A
05      0      0     96      0      G
06     13     16     13     54      t
07      0     96      0      0      C
08      0      0      0     96      T
09     96      0      0      0      A
10     96      0      0      0      A
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     96      0      0      0      A
15     24     24     24     24      n
16     24     24     24     24      n
17     24     24     24     24      n
18     24     24     24     24      n
19     24     24     24     24      n
20     24     24     24     24      n
21     24     24     24     24      n
22     24     24     24     24      n
23     24     24     24     24      n
24     24     24     24     24      n
25     24     24     24     24      n
26     24     24     24     24      n
27     24     24     24     24      n
28     57     13     13     13      a
29      0      0     96      0      G
30      0      0      0     96      T
31      0     96      0      0      C
32     96      0      0      0      A
33     96      0      0      0      A
34      0      0     96      0      G
Binding TFs: 6edt_F (Sigma-70 factor, region 1.2, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4)
Binding Sites: 6edt_O
6edt_P
			
Publications: Boyaci H, Chen J, Jansen R, Darst SA, Campbell EA. Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding. Nature 565:382-385 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.