DNA Binding Motif

						

			
Accessions: MA2436.1 (JASPAR 2024)

			
Names: SPL18A
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: gCGGTAsTACCGCt
Weblogo: 
PSSM: P0      A      C      G      T
01  12150  12291  63433   7202      g
02   4266  71919   5192  13699      C
03  12275   7715  64964  10122      G
04   4117   9971  72124   8864      G
05   1857   3158   1046  89015      T
06  92119    738    450   1769      A
07    471  45361  48794    450      s
08   1539    894    179  92464      T
09  90480    386   2137   2073      A
10    233  93039    518   1286      C
11    636  87176   1841   5423      C
12   4670    627  87654   2125      G
13   1472  78250   7610   7744      C
14  10908  13306  15522  55340      t
Binding Sites: MA2436.1.1 / MA2436.1.2 / MA2436.1.6 / MA2436.1.7
MA2436.1.10
MA2436.1.11
MA2436.1.12
MA2436.1.13
MA2436.1.14
MA2436.1.15
MA2436.1.16
MA2436.1.17
MA2436.1.18
MA2436.1.19
MA2436.1.20
MA2436.1.3 / MA2436.1.4
MA2436.1.5
MA2436.1.8
MA2436.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.