DNA Binding Motif

						

			
Accessions: UP00504A_1 (UniPROBE 20160601)

			
Names: Bagpipe, Bap, bgp, CG7902, Dmel\CG7902, dNK-3, Homeobox protein bagpipe, Homeobox protein NK-3, NK3
Organisms: Drosophila melanogaster
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: GrayyrrCCACTTAryyytgaw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.10   0.12   0.69   0.09      G
02   0.37   0.17   0.27   0.20      r
03   0.56   0.14   0.20   0.11      a
04   0.21   0.40   0.09   0.29      y
05   0.18   0.27   0.18   0.36      y
06   0.25   0.07   0.60   0.08      r
07   0.40   0.12   0.31   0.18      r
08   0.10   0.74   0.15   0.01      C
09      0   0.92      0   0.08      C
10   0.97      0      0   0.03      A
11   0.02   0.97      0      0      C
12      0      0      0   0.99      T
13      0   0.03      0   0.97      T
14   0.96   0.01      0   0.03      A
15   0.58   0.03   0.32   0.08      r
16   0.21   0.30   0.22   0.27      y
17   0.23   0.26   0.18   0.33      y
18   0.16   0.38   0.20   0.26      y
19   0.21   0.10   0.05   0.64      t
20   0.24   0.14   0.43   0.20      g
21   0.60   0.06   0.14   0.20      a
22   0.26   0.23   0.11   0.41      w
Binding TFs: UP00504A (Homeobox domain)
Binding Sites: AAGTACTT
ACACTTAA
ACCACTTA
ACTTAAGT
AGCACTTA
AGTACTTA
ATAAGTGG
CACTTAAA
CACTTAAC
CACTTAAG
CCACTTAA
CCACTTAC
CCACTTAG
CCCACTTA
GCACTTAA
GCCACTTA
GGCACTTA
GGTACTTA
GTACTTAA
TAAGTGGA
			
Publications: Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM. Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity. Development 139:1164-74 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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