DNA Binding Motif

						

			
Accessions: EEAD0148 (EEADannot 2025-01-07)

			
Names: MpRR-MYB2
Organisms: Marchantia polymorpha
Libraries: EEADannot 2025-01-07 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 13
Consensus: wwdwrGATAAgrw
Weblogo: 
PSSM: P0      A      C      G      T
01  0.425  0.093  0.154  0.328      w
02  0.350  0.054  0.102  0.493      w
03  0.290  0.155  0.298  0.257      d
04  0.324  0.118  0.112  0.446      w
05  0.411  0.031  0.415  0.143      r
06  0.000  0.000  1.000  0.000      G
07  1.000  0.000  0.000  0.000      A
08  0.000  0.000  0.000  1.000      T
09  1.000  0.000  0.000  0.000      A
10  0.955  0.000  0.045  0.000      A
11  0.058  0.192  0.512  0.239      g
12  0.427  0.107  0.337  0.130      r
13  0.260  0.145  0.069  0.526      w
Binding TFs: RR-Myb2 (Myb-like DNA-binding domain)
			
Publications: Frangedakis E, Yelina NE, Billakurthi K, Hua L, Schreier T, Dickinson PJ, Tomaselli M, Haseloff J, Hibberd JM. MYB-related transcription factors control chloroplast biogenesis. Cell 187:4859-4876 (2024). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.