DNA Binding Motif
| Accessions: | MA1224.1 (JASPAR 2024), M0042 (AthalianaCistrome v4_May2016) |
| Names: | CBF1, CBF1.DAP, T18160; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | kyyrCCGACatm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 148 64 177 211 k 02 79 192 68 261 y 03 71 288 86 155 y 04 261 0 337 2 r 05 0 596 0 4 C 06 0 600 0 0 C 07 0 0 600 0 G 08 596 0 0 4 A 09 0 600 0 0 C 10 385 38 115 62 a 11 128 100 28 344 t 12 176 204 113 107 m |
| Type: | Heterodimer |
| Binding TFs: | P93835 / T18160 (AP2 domain) P93835 |
| Binding Sites: | MA1224.1.1 MA1224.1.10 MA1224.1.11 MA1224.1.12 MA1224.1.13 MA1224.1.14 MA1224.1.15 MA1224.1.16 MA1224.1.17 MA1224.1.18 MA1224.1.19 MA1224.1.2 MA1224.1.20 MA1224.1.3 MA1224.1.4 / MA1224.1.5 MA1224.1.6 MA1224.1.7 MA1224.1.8 MA1224.1.9 |
| Publications: | Medina J, Bargues M, Terol J, Pérez-Alonso M, Salinas J. The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol 119:463-70 (1999). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.