DNA Binding Motif

Accessions: UP00395A_1 (UniPROBE 20160601)
Names: Cgd2_3490, NONE
Organisms: Cryptosporidium parvum
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 14
Consensus: mmmyGCATGCrysc
Weblogo:
PSSM: P0 A C G T
01 0.31 0.31 0.14 0.24 m
02 0.27 0.29 0.20 0.24 m
03 0.28 0.43 0.11 0.19 m
04 0 0.64 0.01 0.35 y
05 0.01 0 0.99 0 G
06 0 1 0 0 C
07 1 0 0 0 A
08 0 0 0 1 T
09 0 0 1 0 G
10 0 0.99 0 0.01 C
11 0.66 0 0.34 0 r
12 0.16 0.27 0.18 0.38 y
13 0.11 0.37 0.31 0.21 s
14 0.13 0.48 0.17 0.22 c
Binding TFs: UP00395A (AP2 domain)
Binding Sites: ACGCATGC
AGCATGCA
AGCATGCG
AGGCATGC
ATGCATGC
CATGCATG
CCGCATGC
CGCATGCA
CGCATGCC
CGCATGCG
CTGCATGC
GCATGCAA
GCATGCAC
GCATGCGA
GCATGCGC
GCATGCTA
GGCATGCA
TGCATGCA
CGGCATGC
GAGCATGC
Publications: De Silva EK, Gehrke AR, Olszewki K, Leon I, Chahal JS, Bulyk ML, Llinas M. Specific DNA-binding by Apicomplexan AP2 transcription factors. Proc. Natl. Acad. Sci. USA. June 17, 2008; vol. 105, no. 24, 8393-8398 [Pubmed]

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