DNA Binding Motif

						

			
Accessions: M0779 (AthalianaCistrome v4_May2016)

			
Names: AT3G10030.ampDAP, T14816;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: arTTAACGGcgktwa
Weblogo: 
PSSM: P0      A      C      G      T
01    277    147     41    132      a
02    159     62    241    135      r
03     53     58     57    429      T
04      6      0      0    591      T
05    533      3     58      3      A
06    596      0      1      0      A
07      0    597      0      0      C
08     32      4    559      2      G
09     45     30    477     45      G
10    112    392      5     88      c
11     68     42    391     96      g
12     92     27    167    311      k
13     63    122     28    384      t
14    270     21     92    214      w
15    336     28    115    118      a
Binding TFs: T14816 (Amino acid kinase family, Alcohol dehydrogenase transcription factor Myb/SANT-like, Myb/SANT-like DNA-binding domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.