DNA Binding Motif

						

			
Accessions: EEAD0019 (EEADannot 2023-12-22)

			
Names: O2MEME
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 10
Consensus: CCWyrTCAyC
Weblogo: 
PSSM: P0      A      C      G      T
01   0.00   1.00   0.00   0.00      C
02   0.00   1.00   0.00   0.00      C
03   0.71   0.00   0.02   0.27      W
04   0.00   0.51   0.00   0.49      y
05   0.39   0.06   0.55   0.00      r
06   0.00   0.00   0.00   1.00      T
07   0.00   1.00   0.00   0.00      C
08   1.00   0.00   0.00   0.00      A
09   0.00   0.35   0.00   0.65      y
10   0.00   0.82   0.18   0.00      C
Binding TFs: Opaque2 (bZIP transcription factor, Basic region leucine zipper, Basic leucine-zipper C terminal)
			
Publications: Zhan J, Li G, Ryu CH, Ma C, Zhang S, Lloyd A, Hunter BG, Larkins BA, Drews GN, Wang X, Yadegari R. Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm. Plant Cell 30:2425-2446 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.