DNA Binding Motif

						

			
Accessions: 1a1h_A (3D-footprint 20231221)

			
Names: QGSR ZINC FINGER PEPTIDE
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)
Length: 9
Consensus: TgCCCaCGC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0     16     64     16      g
03      0     96      0      0      C
04      0     96      0      0      C
05      0     96      0      0      C
06     48     16     16     16      a
07      0     96      0      0      C
08      0      0     96      0      G
09      0     96      0      0      C
Binding TFs: 1a1h_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1a1h_B
1a1h_C
			
Publications: Elrod-Erickson M, Benson T.E, Pabo C.O. High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure (London, England : 1993) 6:451-64 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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