DNA Binding Motif

						

			
Accessions: MA1876.1 (JASPAR 2024)

			
Names: Gsx
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: AtkrswwtTTAATtrshwwT
Weblogo: 
PSSM: P0      A      C      G      T
01    852     32     39     77      A
02    152    126     54    668      t
03    202     90    270    438      k
04    436    121    274    169      r
05    193    277    313    217      s
06    380    195    152    273      w
07    416    154    165    265      w
08    215     48     70    667      t
09     64     42     44    851      T
10    114     15     13    858      T
11    951      9     27     13      A
12    943     10     11     36      A
13     52     30     14    904      T
14    231    118    200    451      t
15    366    170    260    205      r
16    204    295    252    249      s
17    307    256    142    295      h
18    423    174    146    256      w
19    311     81    106    502      w
20    137     93     67    703      T
Type: Heterodimer
Binding TFs: Q4H3E7 (Homeobox domain)
Q4H3E7
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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