DNA Binding Motif

						

			
Accessions: CUX1_HOXA13_2 (HumanTF2 1.0)

			
Names: CUX1_HOXA13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: cyCrTAAAwATyGATc
Weblogo: 
PSSM: P0      A      C      G      T
01    474   3974    767   1207      c
02    467   2627     38   3795      y
03    869   5552    220   1103      C
04   3806    111   2615     60      r
05     21    113     27   6422      T
06   6422    237    138   1558      A
07   6422    113     40    244      A
08   6422    175    134    117      A
09   2952   1139    584   1746      w
10   6422      0      6     79      A
11     18      4      1   6422      T
12    157   3344    630   3078      y
13     61      0   6422     13      G
14   6422    293    732     67      A
15    145    494    248   6422      T
16    447   3788   1123   1064      c
Type: Heterodimer
Binding TFs: CUX1_TF1 (Homeobox domain, CUT domain, Homeobox KN domain)
HOXA13_TF2 (Homeobox domain, Hox protein A13 N terminal)
HOXA13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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