DNA Binding Motif

						

			
Accessions: PH0125.1 (JASPAR 2024)

			
Names: Obox5_2
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: universal protein binding microarray (PBM)
Length: 17
Consensus: kwyAwTTAATCCctyyt
Weblogo: 
PSSM: P0      A      C      G      T
01     17     22     34     28      k
02     50      9     14     27      w
03     17     25     18     40      y
04     78      3     10      8      A
05     44      7     19     31      w
06     20      2      1     77      T
07      2      0      0     97      T
08     99      0      0      1      A
09     99      0      0      0      A
10      1      0      1     98      T
11      1     98      0      0      C
12      0     87      1     12      C
13      4     66      9     20      c
14      8     22     11     59      t
15     17     35     21     27      y
16     20     33      3     43      y
17     19     23     20     39      t
Binding TFs: Q7TPZ5 (Homeobox domain)
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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