DNA Binding Motif

						

			
Accessions: MA1904.1 (JASPAR 2024)

			
Names: Nk-3
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwttaaTTAATTrrtwwww
Weblogo: 
PSSM: P0      A      C      G      T
01    351    151    163    335      w
02    306    160    196    339      w
03    290    164    239    306      w
04    249    196    242    313      t
05    249    234    185    332      t
06    362    203    207    227      a
07    425    165    213    196      a
08     75    101     84    741      T
09     40     67     16    877      T
10    908     26     38     29      A
11    936     16     25     24      A
12     49     26     30    896      T
13     62     42     79    818      T
14    448     78    312    161      r
15    345    207    253    195      r
16    227    239    197    336      t
17    264    209    201    326      w
18    297    170    204    330      w
19    293    183    178    346      w
20    320    182    160    338      w
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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