DNA Binding Motif

						

			
Accessions: MA1738.1 (JASPAR 2024), MA2371.1 (JASPAR 2024)

			
Names: ATMYB31, MYB31
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: yAmCtmCCAMCyAmh
Weblogo: 
PSSM: P0      A      C      G      T
01    174    505 43.919    277      y
02    769    113  20.27 97.973      A
03    559    285 23.649    132      m
04      0    753 10.135    236      C
05    166    245 30.405    559      t
06    486    302 76.014    135      m
07    106    807      0 86.149      C
08 27.027    765      0 207.77      C
09   1000      0      0      0      A
10    736    258  3.378  1.689      M
11      0   1000      0      0      C
12    199    373 28.716    399      y
13    760 45.608    160 33.784      A
14    289    527 18.581    166      m
15    264    439      0    297      h
Type: Heterodimer
Binding TFs: Q9CA52 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9CA52
			
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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