DNA Binding Motif

						

			
Accessions: HOXD12_EOMES_2 (HumanTF2 1.0)

			
Names: HOXD12_EOMES
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 20
Consensus: tTwAYGAkswwCmTCGTwAA
Weblogo: 
PSSM: P0      A      C      G      T
01     79     36     61    238      t
02     37     23     22    331      T
03    178      1     32    203      w
04    414      0      2     18      A
05     12    414     17    165      Y
06     22     18    414      9      G
07    414      0     12     29      A
08     21     48    221    123      k
09      0    135    273     10      s
10    194     39     34    147      w
11    222     27     23    143      w
12      0    331    100      0      C
13    139    200     84      0      m
14     34      2     37    414      T
15     34    414      0     21      C
16    122     14    414      3      G
17      0      0      4    414      T
18    246     25      0    156      w
19    306      2     24     82      A
20    290     45     21     58      A
Type: Heterodimer
Binding TFs: EOMES_TF2 (T-box)
HOXD12_TF1 (Homeobox domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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