DNA Binding Motif
| Accessions: | MA1286.1 (JASPAR 2024), M0746 (AthalianaCistrome v4_May2016) |
| Names: | TCP24, T03606;, TCP24.DAP |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | rtkGGGACCACh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 153 81 214 146 r 02 113 108 94 279 t 03 74 100 196 224 k 04 12 11 553 18 G 05 0 0 593 1 G 06 0 0 594 0 G 07 527 24 26 17 A 08 0 594 0 0 C 09 0 594 0 0 C 10 567 0 27 0 A 11 16 560 9 9 C 12 195 192 40 167 h |
| Type: | Heterodimer |
| Binding TFs: | Q9C758 / T03606 (TCP family transcription factor) Q9C758 |
| Binding Sites: | MA1286.1.1 MA1286.1.10 MA1286.1.11 MA1286.1.12 MA1286.1.13 MA1286.1.14 MA1286.1.15 MA1286.1.16 MA1286.1.17 MA1286.1.18 MA1286.1.19 MA1286.1.2 MA1286.1.20 MA1286.1.3 MA1286.1.4 MA1286.1.5 MA1286.1.6 MA1286.1.7 MA1286.1.8 MA1286.1.9 |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.