DNA Binding Motif

						

			
Accessions: MA2037.1 (JASPAR 2024)

			
Names: NAC096
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 11
Consensus: hwCAAGTAAyy
Weblogo: 
PSSM: P0      A      C      G      T
01    306    290    191    357      h
02    380    189    260    315      w
03     51    904     51    138      C
04   1110     13      7     14      A
05   1011     84     23     26      A
06      7      1   1129      7      G
07      4     30      9   1101      T
08   1012     12      6    114      A
09   1089     12     12     31      A
10    216    352    145    431      y
11    238    415    183    308      y
Type: Heterodimer
Binding TFs: Q9LS24 (No apical meristem (NAM) protein)
Q9LS24
Binding Sites: MA2037.1.5
MA2037.1.6
MA2037.1.7
MA2037.1.3
MA2037.1.9
MA2037.1.1
MA2037.1.8
MA2037.1.4
MA2037.1.10
MA2037.1.11
MA2037.1.12
MA2037.1.13
MA2037.1.14
MA2037.1.15
MA2037.1.16
MA2037.1.17
MA2037.1.18
MA2037.1.19
MA2037.1.2
MA2037.1.20
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.