DNA Binding Motif

Accessions: MA0148.1 (JASPAR 2024)
Names: FOXA1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: TGTTTrCwywg
Weblogo:
PSSM: P0 A C G T
01 13 2 2 875 T
02 108 7 770 8 G
03 1 7 5 882 T
04 5 7 24 860 T
05 6 3 78 809 T
06 476 12 368 40 r
07 6 807 5 79 C
08 291 106 5 495 w
09 45 368 69 414 y
10 378 9 24 482 w
11 90 125 466 211 g
Type: Heterodimer
Binding TFs: P55317 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
P55317
Binding Sites: MA0148.1.1
MA0148.1.10
MA0148.1.11
MA0148.1.12
MA0148.1.13
MA0148.1.14
MA0148.1.15
MA0148.1.16
MA0148.1.17
MA0148.1.18
MA0148.1.19
MA0148.1.2
MA0148.1.20
MA0148.1.3
MA0148.1.4
MA0148.1.5
MA0148.1.6
MA0148.1.7
MA0148.1.8
MA0148.1.9
Publications: Zhang Y, Liu T, Meyer C.A, Eeckhoute J, Johnson D.S, Bernstein B.E, Nusbaum C, Myers R.M, Brown M, Li W, Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome biology 9:R137 (2008). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.