DNA Binding Motif

						

			
Accessions: M0057 (AthalianaCistrome v4_May2016)

			
Names: RRTF1.DAP, T19766;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: raaatkrCGGCGsmg
Weblogo: 
PSSM: P0      A      C      G      T
01    185     99    233     83      r
02    252    109    100    139      a
03    277     49    132    142      a
04    386      6    101    107      a
05    147     42      5    406      t
06    105      5    236    254      k
07    219     31    315     35      r
08      1    595      0      4      C
09      0      0    598      2      G
10      0      0    600      0      G
11      1    599      0      0      C
12      1      1    565     33      G
13     22    166    389     23      s
14    172    312     39     77      m
15     85     42    390     83      g
Binding TFs: T19766 (AP2 domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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