DNA Binding Motif

						

			
Accessions: PRDM4_full (HumanTF 1.0)

			
Names: PRDM4
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4; Possibly partial; May bind to CAG of barcode
Length: 13
Consensus: TTTCAAGGCCCCC
Weblogo: 
PSSM: P0      A      C      G      T
01     17     35      9  56739      T
02      7     34      0  56762      T
03     22     32      0  56751      T
04     21  56624      0    162      C
05  56364     67     51    377      A
06  56701     83     14     21      A
07      1     59  56716     49      G
08   1314    161  50810   4638      G
09    534  55292    268    864      C
10    388  47362    543   8610      C
11   2409  54100     71    252      C
12     12  56775      0     10      C
13      8  56694      0     92      C
Binding TFs: PRDM4_full
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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