DNA Binding Motif
| Accessions: | UP00025A_2 (UniPROBE 20160601) |
| Names: | A630048H08Rik, AI463295, C330006K01Rik, forkhead box K1, Forkhead box protein K1, Foxk1, Mnf, Myocyte nuclear factor |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 15 |
| Consensus: | cwaAymAyAACAhmy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.43 0.14 0.19 c 02 0.37 0.25 0.12 0.27 w 03 0.49 0.22 0.11 0.18 a 04 0.74 0.04 0.15 0.07 A 05 0.08 0.55 0.03 0.34 y 06 0.59 0.29 0.08 0.04 m 07 0.91 0.03 0.05 0.01 A 08 0.01 0.57 0.01 0.41 y 09 0.95 0.02 0.02 0.01 A 10 0.90 0.02 0.03 0.05 A 11 0.08 0.80 0.03 0.10 C 12 0.82 0.04 0.05 0.08 A 13 0.25 0.34 0.14 0.26 h 14 0.32 0.34 0.13 0.21 m 15 0.23 0.26 0.17 0.34 y |
| Binding TFs: | UP00025A (Fork head domain) |
| Binding Sites: | GTAAACAA AATAAACA AGTAAACA ATAAACAA ATAAACAT ATGTTTAC CATAAACA CGTAAACA CTGTTTAC GATAAACA GGTAAACA GTAAACAC GTAAATAA GTCAACAA TAAACAAA TAAACATA TATAAACA TATTTACA TGTAAACA TGTCAACA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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