DNA Binding Motif
| Accessions: | MA1238.2 (JASPAR 2024) |
| Names: | ERF038, ERF38 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | dyCACCGACAmwd |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 575 277 497 561 d 02 259 811 246 594 y 03 123 1622 64 101 C 04 1691 0 197 22 A 05 7 1892 4 7 C 06 11 1895 1 3 C 07 17 5 1882 6 G 08 1631 120 30 129 A 09 16 1883 4 7 C 10 1588 35 202 85 A 11 673 562 280 395 m 12 621 465 272 552 w 13 608 277 494 531 d |
| Type: | Heterodimer |
| Binding TFs: | Q9ZQP3 (AP2 domain) Q9ZQP3 |
| Binding Sites: | MA1238.2.1 MA1238.2.10 / MA1238.2.9 MA1238.2.11 MA1238.2.10 / MA1238.2.12 MA1238.2.11 / MA1238.2.13 MA1238.2.14 MA1238.2.15 MA1238.2.16 MA1238.2.12 / MA1238.2.17 MA1238.2.13 / MA1238.2.18 MA1238.2.14 / MA1238.2.19 MA1238.2.1 / MA1238.2.2 MA1238.2.15 / MA1238.2.20 MA1238.2.2 / MA1238.2.3 MA1238.2.3 / MA1238.2.4 MA1238.2.4 / MA1238.2.5 MA1238.2.5 / MA1238.2.6 MA1238.2.6 / MA1238.2.7 MA1238.2.7 / MA1238.2.8 MA1238.2.8 / MA1238.2.9 MA1238.2.16 MA1238.2.17 MA1238.2.18 MA1238.2.19 MA1238.2.20 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.