DNA Binding Motif

						

			
Accessions: 2r5z_AB (3D-footprint 20231221)

			
Names: Homeotic protein Sex combs reduced
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene
Length: 11
Consensus: AGATTAATcGG
Weblogo: 
PSSM: P0      A      C      G      T
01     66     10     10     10      A
02      0      0     96      0      G
03     96      0      0      0      A
04      0      0      0     96      T
05      0      0      0     96      T
06     96      0      0      0      A
07     96      0      0      0      A
08     10     10     10     66      T
09     10     60     10     16      c
10      5      5     80      6      G
11      5      1     85      5      G
Type: Heterodimer
Binding TFs: 2r5z_B (Homeobox domain, Homeobox KN domain)
2r5z_A (Homeobox domain)
Binding Sites: 2r5z_C
2r5z_D
			
Publications: Joshi R, Passner J.M, Rohs R, Jain R, Sosinsky A, Crickmore M.A, Jacob V, Aggarwal A.K, Honig B, Mann R.S. Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell 131:530-43 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.