DNA Binding Motif
| Accessions: | 4pu3_ABCD (3D-footprint 20231221) |
| Names: | Toxin-antitoxin system antidote transcriptional repressor Xre family |
| Organisms: | Shewanella oneidensis, strain MR-1 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its operator DNA complex (space group P212121) |
| Length: | 15 |
| Consensus: | AGGnTnnnnnnCTnA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 73 7 9 7 A 02 0 0 96 0 G 03 9 7 73 7 G 04 24 24 24 24 n 05 0 0 0 96 T 06 24 24 24 24 n 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 7 75 7 7 C 13 9 7 7 73 T 14 24 24 24 24 n 15 96 0 0 0 A |
| Binding TFs: | 4pu3_C / 4pu3_D (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain) |
| Binding Sites: | 4pu3_P 4pu3_Q |
| Publications: | Wen Y, Behiels E, Felix J, Elegheert J, Vergauwen B, Devreese B, Savvides S.N. The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic acids research 42:10134-47 (2014). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.