DNA Binding Motif

						

			
Accessions: MA1663.2 (JASPAR 2024)

			
Names: NAC050
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 13
Consensus: whrCAAGtAAChw
Weblogo: 
PSSM: P0      A      C      G      T
01   1241   1036    869   1123      w
02   1140   1204    729   1196      h
03   1427    778   1097    967      r
04    108   3913    118    130      C
05   4208     22     14     25      A
06   4035    144     38     52      A
07     41     23   4171     34      G
08    988    316    238   2727      t
09   3785    157     43    284      A
10   4088     40     27    114      A
11    411   3192    280    386      C
12   1308   1162    556   1243      h
13   1316    731    742   1480      w
Type: Heterodimer
Binding TFs: Q9SQX9 (No apical meristem (NAM) protein)
Q9SQX9
Binding Sites: MA1663.2.1
MA1663.2.10
MA1663.2.11
MA1663.2.12
MA1663.2.13
MA1663.2.14
MA1663.2.15
MA1663.2.16
MA1663.2.17
MA1663.2.18
MA1663.2.19
MA1663.2.2
MA1663.2.20
MA1663.2.3
MA1663.2.4
MA1663.2.5
MA1663.2.6
MA1663.2.7
MA1663.2.8
MA1663.2.9
			
Publications: Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov : (2015;1.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.