DNA Binding Motif

						

			
Accessions: SR1 (Athamap 20091028)

			
Names: SR1
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]
Length: 14
Consensus: TAAAmCGCGsAACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0      5      T
02      5      0      0      0      A
03      5      0      0      0      A
04      5      0      0      0      A
05      3      2      0      0      m
06      0      5      0      0      C
07      0      0      5      0      G
08      0      5      0      0      C
09      0      0      5      0      G
10      0      2      2      1      s
11      5      0      0      0      A
12      5      0      0      0      A
13      0      5      0      0      C
14      5      0      0      0      A
Binding TFs: SR1 (Ankyrin repeat, IQ calmodulin-binding motif, CG-1 domain, Ankyrin repeats (3 copies))
Binding Sites: SR1_1
SR1_2
SR1_3
SR1_4
SR1_5
			
Publications: Yang T, Poovaiah BW. 2002. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J Biol Chem 277: 45049-58. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.