DNA Binding Motif

						

			
Accessions: MA2033.2 (JASPAR 2024)

			
Names: NAC038
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 19
Consensus: TtrCkTGTawcACAAGtwA
Weblogo: 
PSSM: P0      A      C      G      T
01     30      2      5    393      T
02     98      9     51    272      t
03    153     21    165     91      r
04      6    423      0      1      C
05      0      2    255    173      k
06      2      0      0    428      T
07     35     16    378      1      G
08     42     44     10    334      T
09    176     57    103     94      a
10    117    102    103    108      w
11     96    161     70    103      c
12    294     17     58     61      A
13      6    337     40     47      C
14    420      2      2      6      A
15    358     65      5      2      A
16      1      1    422      6      G
17     79     51     29    271      t
18    177     51      7    195      w
19    384      4      2     40      A
Type: Heterodimer
Binding TFs: Q9ZQ25 (No apical meristem (NAM) protein)
Q9ZQ25
Binding Sites: MA2033.2.7
MA2033.2.1
MA2033.2.2
MA2033.2.4
MA2033.2.10
MA2033.2.11
MA2033.2.12
MA2033.2.13
MA2033.2.14
MA2033.2.15
MA2033.2.16
MA2033.2.17
MA2033.2.18
MA2033.2.19
MA2033.2.20
MA2033.2.3
MA2033.2.5
MA2033.2.6
MA2033.2.8
MA2033.2.9
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.