DNA Binding Motif

						

			
Accessions: MA0512.1 (JASPAR 2024)

			
Names: Rxra
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: CArAGKTCAgd
Weblogo: 
PSSM: P0      A      C      G      T
01    278   4521    305    244      C
02   4154    418      9    767      A
03   2623    252   2473      0      r
04   4877      0    471      0      A
05      0      0   5348      0      G
06      0      0   3882   1466      K
07      0    583    643   4122      T
08      0   5348      0      0      C
09   5348      0      0      0      A
10   1150   1070   2336    792      g
11   1640    742   1569   1397      d
Type: Heterodimer
Binding TFs: P28700 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
P28700
Binding Sites: MA0512.1.1
MA0512.1.10
MA0512.1.11
MA0512.1.12
MA0512.1.13
MA0512.1.14
MA0512.1.15
MA0512.1.16
MA0512.1.17
MA0512.1.18
MA0512.1.19
MA0512.1.2
MA0512.1.20
MA0512.1.3
MA0512.1.4
MA0512.1.5
MA0512.1.6
MA0512.1.7
MA0512.1.8
MA0512.1.9
			
Publications: Zhao Q, Chasse S.A, Devarakonda S, Sierk M.L, Ahvazi B, Rastinejad F. Structural basis of RXR-DNA interactions. Journal of molecular biology 296:509-20 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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