DNA Binding Motif

						

			
Accessions: FOXA3_methyl_2 (HT-SELEX2 May2017)

			
Names: FOXA3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: tWrwGTmAATATTTrCwywr
Weblogo: 
PSSM: P0      A      C      G      T
01   1690   2163    948   3868      t
02   2441    149     61   6073      W
03   5054    227   2824    563      r
04   3549    384    556   4323      w
05    144     25   8545     83      G
06      7   1155     17   7773      T
07   5546   3119      5     18      m
08   8665      9      4     14      A
09   8651      4      2     16      A
10      0    113      0   8655      T
11   8668      0     14      1      A
12     19      6      4   8658      T
13     13      4     14   8666      T
14     54      0   1473   7157      T
15   3673      5   4989     25      r
16    165   7011     55   1525      C
17   2877    995   1098   3699      w
18    226   2759    165   5631      y
19   5888     30    151   2658      w
20   3388    736   2973   1571      r
Binding TFs: FOXA3 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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