DNA Binding Motif

						

			
Accessions: HMBOX1_methyl_1 (HT-SELEX2 May2017)

			
Names: HMBOX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 9
Consensus: mCTAGTTAv
Weblogo: 
PSSM: P0      A      C      G      T
01   4970   3728   2689    318      m
02      0  11704    421   1368      C
03    182      0      0  11704      T
04  11704      0   2237      0      A
05      0      0  11704      0      G
06      0      0     42  11704      T
07   1398    512    160  11704      T
08  11704      0    183    386      A
09   3460   3201   3353   1689      v
Binding TFs: HMBOX1 (Homeobox domain, Hepatocyte nuclear factor 1 (HNF-1), N terminus)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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