DNA Binding Motif

						

			
Accessions: MA1932.2 (JASPAR 2024)

			
Names: ELK1::HOXB13
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 15
Consensus: rCCGGAAGThrTAAA
Weblogo: 
PSSM: P0      A      C      G      T
01   4647    293   1843    449      r
02    171   5717    880    143      C
03    145   6721     51     41      C
04      0      0   6731      0      G
05      0      0   6717    298      G
06   6744      0    117      0      A
07   6674      0     82    368      A
08    340     89   6677      0      G
09     76    494      9   6142      T
10   1795   2220    381   2325      h
11   2549     76   5222    462      r
12     87    331    354   6511      T
13   5884    126    387   1569      A
14   6592    407    507    286      A
15   5771   1025    709    960      A
Type: Heterodimer
Binding TFs: Q92826 (Homeobox domain, Hox protein A13 N terminal)
Q92826
			
Publications: Guturu H, Doxey AC, Wenger AM, Bejerano G. Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements. Philos Trans R Soc Lond B Biol Sci 368:20130029 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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