DNA Binding Motif

						

			
Accessions: SPDEF_full_3 (HumanTF 1.0)

			
Names: SPDEF
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: putative multimer; SELEX cycle: 3
Length: 16
Consensus: gCAGwAAGAmGTAWmm
Weblogo: 
PSSM: P0      A      C      G      T
01    493    334   1423     83      g
02    129   2103    183     62      C
03   2189    183     86     40      A
04     69     36   2278     44      G
05    828    241    532    731      w
06   2329      8      0      2      A
07   2329     14     33      0      A
08    587     37   1838     12      G
09   2001      9    333     29      A
10   1259   1016     15     60      m
11      0     84   2334      0      G
12      5      0    224   2232      T
13   2331      0     17    102      A
14   1605      0      0    723      W
15    888   1103      4    409      m
16   1430    875     15     53      m
Binding TFs: SPDEF_full (Ets-domain, Sterile alpha motif (SAM)/Pointed domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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