DNA Binding Motif
| Accessions: | UP00300A_1 (UniPROBE 20160601) |
| Names: | Cha4, CHA4 activatory protein, L8004.8, SIL2, SIL3, YLR098C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | skgkgwAwyTCCGCCbshkks |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.18 0.26 0.34 0.23 s 02 0.22 0.13 0.39 0.26 k 03 0.11 0.16 0.58 0.16 g 04 0.19 0.12 0.35 0.34 k 05 0.13 0.20 0.43 0.24 g 06 0.31 0.14 0.14 0.41 w 07 0.70 0.05 0.07 0.19 A 08 0.42 0.07 0.03 0.48 w 09 0.10 0.56 0.07 0.28 y 10 0 0.16 0.02 0.82 T 11 0 0.99 0 0.01 C 12 0 0.98 0.01 0 C 13 0.02 0.01 0.96 0 G 14 0.01 0.95 0.02 0.02 C 15 0.16 0.72 0.02 0.10 C 16 0.06 0.27 0.40 0.28 b 17 0.11 0.32 0.33 0.25 s 18 0.28 0.29 0.13 0.30 h 19 0.19 0.22 0.30 0.29 k 20 0.22 0.14 0.29 0.34 k 21 0.06 0.25 0.50 0.19 s |
| Binding TFs: | UP00300A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AACTCCGC AATTCCGC ACTCCGCC AGCGGAGA AGGCGGAG ATATCCGC ATCTCCGC ATTTCCGC CCGGCGGA CGGAAATA CGGCGGAA CGGCGGAG CGGGCGGA CTCCGCCC GGCGGAAA GGCGGAGA GGGCGGAA TATCCGCA GGCGGGAA GGGGCGGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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