DNA Binding Motif

						

			
Accessions: 1zg5_AB (3D-footprint 20231221)

			
Names: Nitrate/nitrite response regulator protein narL
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
Length: 16
Consensus: TAmCCCtnnaGnGGtA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     84      3      7      2      A
03     46     44      1      5      m
04      0     96      0      0      C
05     17     69      1      9      C
06      0     96      0      0      C
07     22     15     11     48      t
08     24     24     24     24      n
09     24     24     24     24      n
10     55     15      7     19      a
11      0      0     96      0      G
12     24     24     24     24      n
13      0      0     96      0      G
14      0      0     96      0      G
15      9     15     11     61      t
16     96      0      0      0      A
Binding TFs: 1zg5_A / 1zg5_B (Bacterial regulatory proteins, luxR family, Sigma-70, region 4, Sigma-70, region 4, Winged helix-turn-helix DNA-binding)
Binding Sites: 1zg5_C / 1zg5_D
			
Publications: Maris AE., Kaczor-Grzeskowiak M., Ma Z., Kopka ML., Gunsalus RP., Dickerson RE. Primary and secondary modes of DNA recognition by the NarL two-component response regulator. Biochemistry. 44(44):14538-52 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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