DNA Binding Motif

Accessions: UP00077A_1 (UniPROBE 20160601)
Names: AW049942, AW240594, serum response factor, Srf
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 14
Consensus: wwCCwwATwwGGwa
Weblogo:
PSSM: P0 A C G T
01 0.28 0.17 0.14 0.41 w
02 0.31 0.16 0.16 0.37 w
03 0.05 0.91 0.02 0.03 C
04 0.01 0.81 0.01 0.16 C
05 0.59 0.05 0.05 0.32 w
06 0.31 0.01 0.01 0.67 w
07 0.72 0.01 0.03 0.23 A
08 0.23 0.03 0.01 0.72 T
09 0.67 0.01 0.01 0.31 w
10 0.35 0.03 0.02 0.60 w
11 0.16 0.01 0.81 0.01 G
12 0.03 0.02 0.91 0.05 G
13 0.32 0.19 0.17 0.32 w
14 0.64 0.15 0.10 0.12 a
Binding TFs: UP00077A (SRF-type transcription factor (DNA-binding and dimerisation domain))
Binding Sites: AAAAAAAT
AAAAAATA
AAATAAGG
ACAAAAAA
ACCAAAAA
ACCATAAA
ATATATGG
ATATTTGG
ATTTATGG
CAAAAAAA
CAAATATG
CATATATG
CCAAAAAA
CCATAAAA
CCATATAA
CCATATTA
CCTTAAAA
GAAAAAAA
TACCATAA
AAAAAAAA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.