DNA Binding Motif
| Accessions: | UP00077A_1 (UniPROBE 20160601) |
| Names: | AW049942, AW240594, serum response factor, Srf |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | wwCCwwATwwGGwa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.28 0.17 0.14 0.41 w 02 0.31 0.16 0.16 0.37 w 03 0.05 0.91 0.02 0.03 C 04 0.01 0.81 0.01 0.16 C 05 0.59 0.05 0.05 0.32 w 06 0.31 0.01 0.01 0.67 w 07 0.72 0.01 0.03 0.23 A 08 0.23 0.03 0.01 0.72 T 09 0.67 0.01 0.01 0.31 w 10 0.35 0.03 0.02 0.60 w 11 0.16 0.01 0.81 0.01 G 12 0.03 0.02 0.91 0.05 G 13 0.32 0.19 0.17 0.32 w 14 0.64 0.15 0.10 0.12 a |
| Binding TFs: | UP00077A (SRF-type transcription factor (DNA-binding and dimerisation domain)) |
| Binding Sites: | AAAAAAAT AAAAAATA AAATAAGG ACAAAAAA ACCAAAAA ACCATAAA ATATATGG ATATTTGG ATTTATGG CAAAAAAA CAAATATG CATATATG CCAAAAAA CCATAAAA CCATATAA CCATATTA CCTTAAAA GAAAAAAA TACCATAA AAAAAAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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