DNA Binding Motif

						

			
Accessions: UP00440A_1 (UniPROBE 20160601)

			
Names: None, PFE0840c, putative, transcription factor with AP2 domain(s)
Organisms: Plasmodium falciparum
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: ChwysmdTGACATCAwrmrwag
Weblogo: 
PSSM: P0      A      C      G      T
01   0.05   0.81   0.03   0.12      C
02   0.32   0.25   0.12   0.31      h
03   0.37   0.21   0.08   0.34      w
04   0.19   0.27   0.15   0.39      y
05   0.15   0.34   0.31   0.20      s
06   0.28   0.26   0.21   0.24      m
07   0.26   0.06   0.34   0.33      d
08   0.13   0.03   0.02   0.82      T
09   0.04   0.03   0.90   0.03      G
10   0.90   0.04   0.01   0.04      A
11   0.01   0.87   0.02   0.10      C
12   0.94   0.01   0.02   0.03      A
13   0.03   0.02   0.01   0.93      T
14   0.05   0.90   0.03   0.02      C
15   0.87   0.03   0.02   0.08      A
16   0.28   0.20   0.14   0.38      w
17   0.43   0.11   0.25   0.21      r
18   0.40   0.34   0.16   0.10      m
19   0.39   0.09   0.35   0.18      r
20   0.34   0.12   0.07   0.47      w
21   0.58   0.11   0.08   0.24      a
22   0.22   0.04   0.59   0.16      g
Binding TFs: UP00440A (AP2 domain)
Binding Sites: TGACATCA
ACAAATAA
CATCTGTA
CGTCATCA
TGTCAACA
TTTCGAAA
AAACAAAT
AAATAAAG
AGATGATG
ATGAAGTA
ATGATGAA
ATGATGTC
CATCATAA
CATCATAC
CATCTTCG
CGACATCG
GATGACGA
GATGCAGC
GATGTCAC
TATGATGA
			
Publications: Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.