DNA Binding Motif

						

			
Accessions: 1dsz_AB (3D-footprint 20231221)

			
Names: RETINOIC ACID RECEPTOR ALPHA
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1
Length: 12
Consensus: tGACCnnTGaCC
Weblogo: 
PSSM: P0      A      C      G      T
01      8      8     16     64      t
02      0      0     96      0      G
03     88      0      8      0      A
04      0     96      0      0      C
05      0     96      0      0      C
06     24     24     24     24      n
07     24     24     24     24      n
08      8      8      8     72      T
09      0      0     96      0      G
10     64      8     16      8      a
11      0     96      0      0      C
12      0     96      0      0      C
Type: Heterodimer
Binding TFs: 1dsz_A (Zinc finger, C4 type (two domains))
1dsz_B (Zinc finger, C4 type (two domains))
Binding Sites: 1dsz_C
1dsz_D
			
Publications: Rastinejad F., Wagner T., Zhao Q., Khorasanizadeh S. Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1.. EMBO J. 19:1045-1054 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.