DNA Binding Motif

						

			
Accessions: MA1233.1 (JASPAR 2024), M0017 (AthalianaCistrome v4_May2016)

			
Names: AT1G71450, ERF021, AT1G71450.DAP, T06021;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: cwcCrcCrcCdyCrCCGyCr
Weblogo: 
PSSM: P0      A      C      G      T
01     96    354     28     90      c
02    211     75    130    152      w
03     54    352     54    108      c
04     52    417     37     62      C
05    190      0    253    125      r
06     63    383     14    108      c
07     58    430     14     66      C
08    180     33    243    112      r
09     63    341     30    134      c
10     66    406     24     72      C
11    165     32    205    166      d
12     37    340     38    153      y
13     35    463      5     65      C
14    249      3    238     78      r
15     23    507     14     24      C
16     24    526      4     14      C
17     75      5    445     43      G
18     95    290     24    159      y
19     19    526      3     20      C
20    274      9    189     96      r
Type: Heterodimer
Binding TFs: T06021 (AP2 domain)
Q9C912 (Ribosomal protein L35Ae)
Q9C912
Binding Sites: MA1233.1.1
MA1233.1.10
MA1233.1.11
MA1233.1.12
MA1233.1.13
MA1233.1.14
MA1233.1.15
MA1233.1.16
MA1233.1.17
MA1233.1.18
MA1233.1.19
MA1233.1.2
MA1233.1.20
MA1233.1.3
MA1233.1.4
MA1233.1.5
MA1233.1.6
MA1233.1.7
MA1233.1.8
MA1233.1.9
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.