DNA Binding Motif

						

			
Accessions: 3zql_B (3D-footprint 20231221)

			
Names: PUTATIVE REPRESSOR SIMREG2
Organisms: Streptomyces antibioticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DNA-bound form of TetR-like repressor SimR
Length: 8
Consensus: TTCGTACG
Weblogo: 
PSSM: P0      A      C      G      T
01      9     11      9     67      T
02     11      9      9     67      T
03      9     67     11      9      C
04      0      0     96      0      G
05      0      0      0     96      T
06     96      0      0      0      A
07      0     96      0      0      C
08      0      0     96      0      G
Binding TFs: 3zql_B (Bacterial regulatory proteins, tetR family, Tetracyclin repressor, C-terminal all-alpha domain)
Binding Sites: 3zql_E
3zql_F
			
Publications: Le T.B, Schumacher M.A, Lawson D.M, Brennan R.G, Buttner M.J. The crystal structure of the TetR family transcriptional repressor SimR bound to DNA and the role of a flexible N-terminal extension in minor groove binding. Nucleic acids research 39:9433-47 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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