DNA Binding Motif

						

			
Accessions: Rara_DBD_2 (HumanTF 1.0)

			
Names: Rara
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4
Length: 17
Consensus: AGGTCAmbyAAAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01    237      0     30      1      A
02      2      2    236      2      G
03      1      3    206     47      G
04      1      1      7    252      T
05      0    354      2      3      C
06    314      0      0      1      A
07     81    138     17     49      m
08     37     73     72     83      b
09     60    107     18     93      y
10    222     15     18     46      A
11    213      3     57      4      A
12    252      3     25      0      A
13      0      1    221      0      G
14      0      1    193     30      G
15      0      1      0    234      T
16      1    387      0      3      C
17    281      0      5      0      A
Binding TFs: Rara_DBD (Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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